Tapered chiral nanoparticles as broad-spectrum thermally stable antivirals for SARS-CoV-2 variants.

The incessant mutations of viruses, variable immune responses, and likely emergence of new viral threats necessitate multiple approaches to novel antiviral therapeutics. Furthermore, the new antiviral agents should have broad-spectrum activity and be environmentally stable. Here, we show that biocompatible tapered CuS nanoparticles (NPs) efficiently agglutinate coronaviruses with binding affinity dependent on the chirality of surface ligands and particle shape. L-penicillamine-stabilized NPs with left-handed curved apexes display half-maximal inhibitory concentrations (IC50) as low as 0.66 pM (1.4 ng/mL) and 0.57 pM (1.2 ng/mL) for pseudo-type SARS-CoV-2 viruses and wild-type Wuhan-1 SARS-CoV-2 viruses, respectively, which are about 1,100 times lower than those for antibodies (0.73 nM). Benefiting from strong NPs-protein interactions, the same particles are also effective against other strains of coronaviruses, such as HCoV-HKU1, HCoV-OC43, HCoV-NL63, and SARS-CoV-2 Omicron variants with IC50 values below 10 pM (21.8 ng/mL). Considering rapid response to outbreaks, exposure to elevated temperatures causes no change in the antiviral activity of NPs while antibodies are completely deactivated. Testing in mice indicates that the chirality-optimized NPs can serve as thermally stable analogs of antiviral biologics complementing the current spectrum of treatments.

Biomimetic catalysis of nitrite reductase enzyme using copper complexes in chemical and electrochemical reduction of nitrite.

Copper nitrite reductase mimetics were synthesized using three new tridentate ligands sharing the same N,N,N motif of coordination. The ligands were based on L-proline modifications, attaching a pyridine and a triazole to the pyrrolidine ring, and differ by a pendant group (R = phenyl, n-butyl and n-propan-1-ol). All complexes coordinate nitrite, as evidenced by cyclic voltammetry, UV-Vis, FTIR and electron paramagnetic resonance (EPR) spectroscopies. The coordination mode of nitrite was assigned by FTIR and EPR as κ2O chelate mode. Upon acidification, EPR experiments indicated a shift from chelate to monodentate κO mode, and 15N NMR experiments of a Zn2+ analogue, suggested that the related Cu(II) nitrous acid complex may be reasonably stable in solution, but in equilibrium with free HONO under non catalytic conditions. Reduction of nitrite to NO was performed both chemically and electrocatalytically, observing the highest catalytic activities for the complex with n-propan-1-ol as pendant group. These results support the hypothesis that a hydrogen bond moiety in the secondary coordination sphere may aid the protonation step.

Enantiomer-dependent immunological response to chiral nanoparticles.

Chirality is a unifying structural metric of biological and abiological forms of matter. Over the past decade, considerable clarity has been achieved in understanding the chemistry and physics of chiral inorganic nanoparticles1-4; however, little is known about their effects on complex biochemical networks5,6. Intermolecular interactions of biological molecules and inorganic nanoparticles show some commonalities7-9, but these structures differ in scale, in geometry and in the dynamics of chiral shapes, which can both impede and strengthen their mirror-asymmetric complexes. Here we show that achiral and left- and right-handed gold biomimetic nanoparticles show different in vitro and in vivo immune responses. We use irradiation with circularly polarized light (CPL) to synthesize nanoparticles with controllable nanometre-scale chirality and optical anisotropy factors (g-factors) of up to 0.4. We find that binding of nanoparticles to two proteins from the family of adhesion G-protein-coupled receptors (AGPCRs)-namely cluster-of-differentiation 97 (CD97) and epidermal-growth-factor-like-module receptor 1 (EMR1)-results in the opening of mechanosensitive potassium-efflux channels, the production of immune signalling complexes known as inflammasomes, and the maturation of mouse bone-marrow-derived dendritic cells. Both in vivo and in vitro immune responses depend monotonically on the g-factors of the nanoparticles, indicating that nanoscale chirality can be used to regulate the maturation of immune cells. Finally, left-handed nanoparticles show substantially higher (1,258-fold) efficiency compared with their right-handed counterparts as adjuvants for vaccination against the H9N2 influenza virus, opening a path to the use of nanoscale chirality in immunology.

Graphitic carbon nitrides as platforms for single-atom photocatalysis.

Herein we demonstrate that adding single atoms of selected transition metals to graphitic carbon nitrides allows the tailoring of the electronic and chemical properties of these 2D nanomaterials, directly impacting their usage in photocatalysis. These single-atom photocatalysts were successfully prepared with Ni2+, Pt2+ or Ru3+ by cation exchange, using poly(heptazine imides) (PHI) as the 2D layered platform. Differences in photocatalytic performance for these metals were assessed using rhodamine-B (RhB) and methyl orange (MO) as model compounds for degradation. We have demonstrated that single atoms may either improve or impair the degradation of RhB and MO, depending on the proper matching of the net charge of these molecules and the surface potential of the catalyst, which in turn is responsive to the metal incorporated into the PHI nanostructures. Computer simulations demonstrated that even one transition metal cation caused dramatic changes in the electronic structure of PHI, especially regarding light absorption, which was extended all along the visible up to the near IR region. Besides introducing new quantum states, the metal atoms strongly polarized the molecular orbitals across the PHI and electrostatic fields arising from the electronic transitions became at least tenfold stronger. This simple proof of concept demonstrates that these new materials hold promise as tools for many important photocatalytic reactions that are strongly dependent on our ability to control surface charge and its polarization under illumination, such as H2 evolution, CO2 reduction and photooxidation in general.

Emergence of complexity in hierarchically organized chiral particles.

The structural complexity of composite biomaterials and biomineralized particles arises from the hierarchical ordering of inorganic building blocks over multiple scales. Although empirical observations of complex nanoassemblies are abundant, the physicochemical mechanisms leading to their geometrical complexity are still puzzling, especially for nonuniformly sized components. We report the self-assembly of hierarchically organized particles (HOPs) from polydisperse gold thiolate nanoplatelets with cysteine surface ligands. Graph theory methods indicate that these HOPs, which feature twisted spikes and other morphologies, display higher complexity than their biological counterparts. Their intricate organization emerges from competing chirality-dependent assembly restrictions that render assembly pathways primarily dependent on nanoparticle symmetry rather than size. These findings and HOP phase diagrams open a pathway to a large family of colloids with complex architectures and unusual chiroptical and chemical properties.

Site-selective photoinduced cleavage and profiling of DNA by chiral semiconductor nanoparticles.

Gene editing is an important genetic engineering technique that enables gene manipulation at the molecular level. It mainly relies on engineered nucleases of biological origin, whose precise functions cannot be replicated in any currently known abiotic artificial material. Here, we show that chiral cysteine-modified CdTe nanoparticles can specifically recognize and, following photonic excitation, cut at the restriction site GAT'ATC (' indicates the cut site) in double-stranded DNA exceeding 90 base pairs, mimicking a restriction endonuclease. Although photoinduced reactive oxygen species are found to be responsible for the cleavage activity, the sequence selectivity arises from the affinity between cysteine and the conformation of the specific DNA sequence, as confirmed by quantum-chemical calculations. In addition, we demonstrate non-enzymatic sequence-specific DNA incision in living cells and in vivo using these CdTe nanoparticles, which may help in the design of abiotic materials for gene editing and other biological applications.

Chiral recognition of liquid phase dimers from gamma-valerolactone racemic mixture.

Gamma-valerolactone (GVL) is a cyclic ester that can be considered a green alternative in chemical processes due to its environmentally friendly physical and chemical properties and low production cost from biomass. Although GVL is a chiral solvent, it is usually used as a racemic mixture, instead of its homochiral forms, which might improve its performance in enantioselective synthesis and chiral separation chromatographic techniques. This report presents the development and validation of an atomistic force field optimized to reproduce GVL liquid-phase properties via Monte Carlo (MC) and molecular dynamics (MD) simulation methods. The optimized force field improved the description of the interactions between pairs of molecules, which is a key aspect for a proper assessment of subtle interactions between the enantiomeric forms of GVL. Inspection of radial distribution functions (RDF) for correlations between RR, SS, and RS interactions found within GVL racemic mixture shows very subtle differences at the first solvation shell. Average interaction energies [Formula: see text], [Formula: see text] and [Formula: see text] for RR, SS, and RS dimer ensembles, respectively, were calculated with force field and also HF-3c and PBEh-3c quantum chemistry methods. For each methodology, resulting values obtained for [Formula: see text] and [Formula: see text] were almost the same and more negative than [Formula: see text]. Also, the average energy fluctuation obtained for RR and SS dimers were higher than the one obtained for RS.

Chiromagnetic nanoparticles and gels.

Chiral inorganic nanostructures have high circular dichroism, but real-time control of their optical activity has so far been achieved only by irreversible chemical changes. Field modulation is a far more desirable path to chiroptical devices. We hypothesized that magnetic field modulation can be attained for chiral nanostructures with large contributions of the magnetic transition dipole moments to polarization rotation. We found that dispersions and gels of paramagnetic Co3O4 nanoparticles with chiral distortions of the crystal lattices exhibited chiroptical activity in the visible range that was 10 times as strong as that of nonparamagnetic nanoparticles of comparable size. Transparency of the nanoparticle gels to circularly polarized light beams in the ultraviolet range was reversibly modulated by magnetic fields. These phenomena were also observed for other nanoscale metal oxides with lattice distortions from imprinted amino acids and other chiral ligands. The large family of chiral ceramic nanostructures and gels can be pivotal for new technologies and knowledge at the nexus of chirality and magnetism.

Chiral Inorganic Nanostructures.

The field of chiral inorganic nanostructures is rapidly expanding. It started from the observation of strong circular dichroism during the synthesis of individual nanoparticles (NPs) and their assemblies and expanded to sophisticated synthetic protocols involving nanostructures from metals, semiconductors, ceramics, and nanocarbons. Besides the well-established chirality transfer from bioorganic molecules, other methods to impart handedness to nanoscale matter specific to inorganic materials were discovered, including three-dimentional lithography, multiphoton chirality transfer, polarization effects in nanoscale assemblies, and others. Multiple chiral geometries were observed with characteristic scales from ångströms to microns. Uniquely high values of chiral anisotropy factors that spurred the development of the field and differentiate it from chiral structures studied before, are now well understood; they originate from strong resonances of incident electromagnetic waves with plasmonic and excitonic states typical for metals and semiconductors. At the same time, distinct similarities with chiral supramolecular and biological systems also emerged. They can be seen in the synthesis and separation methods, chemical properties of individual NPs, geometries of the nanoparticle assemblies, and interactions with biological membranes. Their analysis can help us understand in greater depth the role of chiral asymmetry in nature inclusive of both earth and space. Consideration of both differences and similarities between chiral inorganic, organic, and biological nanostructures will also accelerate the development of technologies based on chiroplasmonic and chiroexcitonic effects. This review will cover both experiment and theory of chiral nanostructures starting with the origin and multiple components of mirror asymmetry of individual NPs and their assemblies. We shall consider four different types of chirality in nanostructures and related physical, chemical, and biological effects. Synthetic methods for chiral inorganic nanostructures are systematized according to chirality types, materials, and scales. We also assess technological prospects of chiral inorganic materials with current front runners being biosensing, chiral catalysis, and chiral photonics. Prospective venues for future fundamental research are discussed in the conclusion of this review.

Optical anisotropy and sign reversal in layer-by-layer assembled films from chiral nanoparticles.

Chiral anisotropy and related optical effects at the nanoscale represent some of the most dynamic areas of nanomaterials today. Translation of optical activity of chiral semiconductor and metallic nanoparticles (NPs) into optoelectronic devices requires preparation of thin films from chiral NPs on both flat and curved surfaces. In this paper we demonstrate that chiral NP films can be made via layer-by-layer assembly (LBL) using negatively charged chiral CdS NPs, stabilized by d- and l-cysteine and positively charged polyelectrolytes, as building blocks. LBL coatings from NPs combine simplicity of preparation and strong optical activity. Circular extinction measurements using circular dichroism instruments indicate that the film possess four chiroptical bands at 280, 320, 350, and 390 nm. The latter two bands at 390 and 350 nm are associated with the band gap transitions (chiral excitons), while the former two are attributed to transitions involving surface ligands. When NPs are assembled in LBL films, the rotatory activity and the sign for circular extinction associated with the electronic transition in the inorganic core of the NPs is conserved. However, this is not true for circular extinction bands at short wavelengths: the sign of the rotatory optical activity is reversed. This effect is attributed to the change of the conformation of surface ligands in the polyelectrolyte matrix, which was confirmed both by semi-empirical and density functional (DFT) quantum mechanical calculations. Circular dichroism spectra calculated using a DFT algorithm closely match the experimental spectra of CdS NPs. These findings indicate that the spectroscopic methods sensitive to chirality of the surface ligands can be used to investigate fine structural changes in the surface layer of nanocolloids. Strong rotatory optical activity of nanostructured semiconductor films opens the possibilities for new polarization-based optical devices.

Surface Electrostatic Potential and Water Orientation in the presence of Sodium Octanoate Dilute Monolayers Studied by Means of Molecular Dynamics Simulations.

A series of atomistic molecular dynamics simulations were performed in the present investigation to assess the spontaneous formation of surfactant monolayers of sodium octanoate at the water-vacuum interface. The surfactant surface coverage increased until a saturation threshold was achieved, after which any further surfactant addition led to the formation of micellar aggregates within the solution. The saturated films were not densely packed, as might be expected for short-chained surfactants, and all films regardless of the surface coverage presented surfactant molecules with the same ordering pattern, namely, with the ionic heads toward the aqueous solution and the tails lying nearly parallel to the interface. The major contributions to the electrostatic surface potential came from the charged heads and the counterion distribution, which nearly canceled out each other. The balance between the oppositely charged ions rendered the electrostatic contributions from water meaningful, amounting to ca. 10% of the contributions arising from the ionic species. And even the aliphatic tails, whose atoms bear relatively small partial atomic charges as compared to the polar molecules and molecular fragments, contributed with ca. 20% of the total electrostatic surface potential of the systems under investigation. Although the aliphatic tails were not so orderly arranged as in a compact film, the C-H bonds assumed a preferential orientation, leading to an increased contribution to the electrostatic properties of the interface. The most prominent feature arising from the partitioning of the electrostatic potential into individual contributions was the long-range ordering of the water molecules. This ordering of the water molecules produced a repulsive dipole-dipole interaction between the two interfaces, which increased with the surface coverage. Only for a water layer wider than 10 nm was true bulk behavior observed, and the repulsive dipole-dipole interaction faded away.

Thermodynamic insights into the self-assembly of capped nanoparticles using molecular dynamic simulations.

Although the molecular modeling of self-assembling processes stands as a challenging research issue, there have been a number of breakthroughs in recent years. This report describes the use of large-scale molecular dynamics simulations with coarse grained models to study the spontaneous self-assembling of capped nanoparticles in chloroform suspension. A model system comprising 125 nanoparticles in chloroform evolved spontaneously from a regular array of independent nanoparticles to a single thread-like, ramified superstructure spanning the whole simulation box. The aggregation process proceeded by means of two complementary mechanisms, the first characterized by reactive collisions between monomers and oligomers, which were permanently trapped into the growing superstructure, and the second a slow structural reorganization of the nanoparticle packing. Altogether, these aggregation processes were over after ca. 0.6 µs and the system remained structurally and energetically stable until 1 µs. The thread-like structure closely resembles the TEM images of capped ZrO2, but a better comparison with experimental results was obtained by the deposition of the suspension over a graphene solid substrate, followed by the complete solvent evaporation. The agreement between the main structural features from this simulation and those from the TEM experiment was excellent and validated the model system. In order to shed further light on the origins of the stable aggregation of the nanoparticles, the Gibbs energy of aggregation was computed, along with its enthalpy and entropy contributions, both in chloroform and in a vacuum. The thermodynamic parameters arising from the modeling are consistent with larger nanoparticles in chloroform due to the solvent-swelled organic layer and the overall effect of the solvent was the partial destabilization of the aggregated state as compared to the vacuum system. The modeling strategy has been proved effective and reliable to describe the self-assembling of capped nanoparticles, but we must acknowledge the fact that larger model systems and longer timescales will be necessary in future investigations in order to assess structural and dynamical information approaching the behavior of macroscopic systems.

Aggregation thermodynamics of sodium octanoate micelles studied by means of molecular dynamics simulations.

The present work is aimed at studying the computation of the thermodynamic potentials that describe the stability of anionic surfactant molecules in micellar aggregates. We report a set of molecular dynamics simulations of a sodium octanoate micelle in aqueous solution using the umbrella sampling method along with the Jarzynski equality in order to compute the potential of mean force for the dissociation process of one surfactant molecule from a previously assembled micellar aggregate. The Jarzynski average was computed at several different temperatures in order to estimate the Gibbs energy of association for the octanoate anion, which was split into its enthalpic and entropic contributions. We also estimated the contributions arising from the polar head and the apolar tail for each thermodynamic potential, and a detailed picture emerged from these simulations. The aggregation is driven mostly by the Gibbs energy contribution arising from the hydrophobic tail, which was large enough to cancel out the unfavorable contribution from the polar head. Although the association process may be ascribed mostly to the transfer of the apolar tail to the micellar core, it should be noted that the polar head also contributed with a favorable entropic term to the overall Gibbs energy. These findings were rationalized by comparing the energetic and structural patterns of the hydration process of a free monomer in solution to an aggregated molecule. The interaction energy distributions presented at least two discernible populations and each population was related to a different structural pattern, as characterized by the radial distribution functions. Altogether, the changes in both the energy and structure of the hydration layer are consistent with the entropy-driven association of the surfactant into the micellar aggregate.

Antimony-doped tin oxide nanocrystals: synthesis and solubility behavior in organic solvents.

This work focuses on the nonaqueous synthesis of antimony-doped tin oxide nanocrystals in the size range of 2-6 nm and the investigation of their solubility in organic solvents (CHCl(3) and THF) in the presence of amphiphilic molecules (oleic acid and oleylamine). To unravel the underlying processes, a set of molecular dynamics simulations is performed involving the compatibility of oleic acid and oleylamine in mixtures with both CHCl(3) and THF. The results show that the method is useful for obtaining the desired oxide, and that the interaction between amphiphilic molecules and solvents can be predicted by molecular dynamics simulations with very good qualitative agreement.

Molecular dynamics simulation of a perylene-derivative Langmuir film.

We performed a series of molecular dynamics simulations of an N,N'-di-n-butyl-3,4:9,10-perylene tetracarboxydiimide (BuPTCD) Langmuir film. The film was studied at three surface areas (0.38, 0.40, and 0.45 nm2 molecule(-1)) using model systems consisting of one BuPTCD monolayer on each side of a 6.0-nm-thick water slab. On the basis of geometrical reasoning and surface pressure results, it was found that perylene molecules seem to be oriented mainly head-on toward the water surface. On the other hand, the average orientation of the perylene tetracarboxidiimide moiety during simulations indicated that molecular alignment is not simple, changing from tilted face-on to tilted head-on during compression. The change in orientation of BuPTCD molecules was accompanied by the thickening of the film as the area decreased. Films also became more orderly at small surface areas, mostly at the rigid perylene core. BuPTCD molecules are not evenly hydrated, with very few solvent molecules hydrating the hydrophobic tails, whereas a considerable number of water molecules were hydrogen bonded to diimide oxygen atoms. Besides, the residence times of water molecules around perylene atomic sites increased from the terminal methyl groups to the diimide oxygen atoms. Finally, the electric potential profile across the monolayer was found to depend on the area occupied by each molecule, indicating that properties of the films may vary considerably with the area occupied by each molecule. Altogether, the molecular description arising from our computer simulations suggests which structural patterns may be found in these films depending on the surface density of perylene molecules.